17May2021

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Databases

http://utrdb.ba.itb.cnr.it/
A specialized database of 5' and 3' eukaryotic mRNA untranslated sequences

http://utrsite.ba.itb.cnr.it/
A specialized database of experimentally validated regulatory elements located in 5' and 3' eukaryotic mRNA untranslated sequences

http://mi.caspur.it/SpliceAidF/
A specialized database of splicing factors and their experimentally validated binding targets

http://mi.caspur.it/mitozoa/index.php
A curated database for comparative Mitogenomics in Metazoa

Software & Web Tools

http://itbtools.ba.itb.cnr.it/patsearch
Detects regular expression patterns and structural motifs in nucleotide sequences

http://159.149.160.51/modtools/
A tool for discovering over-represented nucleotide patterns in nucleotide sequences (i.e. transcription factor binding sites)

http://159.149.160.51/modtools/
A tool for the discovery of conserved sequence/structural motifs in unaligned RNA sequences

http://159.149.160.51/exalign/
A tool for comparative analysis of exon-intron gene structures

http://www.caspur.it/ExpEdit/
a tool for exploring human RNA editing in RNA-Seq experiments

http://genome.ufl.edu/genesig/
Alternative splicing isoform signature

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